HL_6ZVK_018

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_018 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2918

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6ZVK|1|K3|C|710
6ZVK|1|K3|C|711
6ZVK|1|K3|G|712
6ZVK|1|K3|C|713
6ZVK|1|K3|G|714
6ZVK|1|K3|A|715
6ZVK|1|K3|G|716
6ZVK|1|K3|G|717

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains