HL_6ZVK_020
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UGUUCAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6ZVK|1|K3|G|821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZVK_020 not in the Motif Atlas
- Homologous match to HL_4V88_203
- Geometric discrepancy: 0.1614
- The information below is about HL_4V88_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
6ZVK|1|K3|U|820
6ZVK|1|K3|G|821
6ZVK|1|K3|U|822
6ZVK|1|K3|U|823
6ZVK|1|K3|C|824
6ZVK|1|K3|A|825
6ZVK|1|K3|A|826
6ZVK|1|K3|A|827
6ZVK|1|K3|G|828
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain I5
- 40S ribosomal protein S24
- Chain d3
- Ribosomal protein S9 (Predicted)
- Chain j3
- 40S ribosomal protein S4
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