HL_6ZVK_022

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|K3|C|884
6ZVK|1|K3|U|885
6ZVK|1|K3|A|886
6ZVK|1|K3|U|887
6ZVK|1|K3|U|888
6ZVK|1|K3|U|889
6ZVK|1|K3|U|890
6ZVK|1|K3|G|891
6ZVK|1|K3|U|892
6ZVK|1|K3|U|893
6ZVK|1|K3|G|894
6ZVK|1|K3|G|895
6ZVK|1|K3|U|896
6ZVK|1|K3|U|897
6ZVK|1|K3|U|898
6ZVK|1|K3|U|899
6ZVK|1|K3|C|900
6ZVK|1|K3|G|901
6ZVK|1|K3|G|902

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain G3

Ribosomal protein S11

Chain b3

40S ribosomal protein S6