HL_6ZVK_034

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

6ZVK|1|K3|U|1462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_034 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.5154

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6ZVK|1|K3|C|1460
6ZVK|1|K3|G|1461
6ZVK|1|K3|U|1462
6ZVK|1|K3|U|1463
6ZVK|1|K3|C|1464
6ZVK|1|K3|A|1465
6ZVK|1|K3|G|1466

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain C3

40S RIBOSOMAL PROTEIN ES17