HL_6ZVK_044
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZVK_044 not in the Motif Atlas
- Homologous match to HL_8C3A_003
- Geometric discrepancy: 0.1683
- The information below is about HL_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67216.9
- Basepair signature
- cWW-cWW-F-tSH
- Number of instances in this motif group
- 9
Unit IDs
6ZVK|1|e2|C|89
6ZVK|1|e2|G|90
6ZVK|1|e2|G|91
6ZVK|1|e2|C|92
6ZVK|1|e2|G|93
6ZVK|1|e2|A|94
6ZVK|1|e2|G|95
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain F2
- eL42
- Chain S2
- 60S RIBOSOMAL PROTEIN EL18
- Chain a7
- 60S ribosomal protein L13
- Chain q2
- uL15
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