HL_6ZVK_050
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 6ZVK|1|e2|G|315, 6ZVK|1|e2|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZVK_050 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.205
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6ZVK|1|e2|G|314
6ZVK|1|e2|G|315
6ZVK|1|e2|U|316
6ZVK|1|e2|A|317
6ZVK|1|e2|A|318
6ZVK|1|e2|A|319
6ZVK|1|e2|C|320
6ZVK|1|e2|U|321
6ZVK|1|e2|C|322
6ZVK|1|e2|C|323
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain B2
- 60S ribosomal protein L36
- Chain F2
- eL42
- Chain a7
- 60S ribosomal protein L13
- Chain q2
- uL15
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