HL_6ZVK_051

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_051 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.1722

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZVK|1|e2|C|368
6ZVK|1|e2|G|369
6ZVK|1|e2|U|370
6ZVK|1|e2|A|371
6ZVK|1|e2|A|372
6ZVK|1|e2|G|373

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain C2

Ribosomal protein L37

Chain D2

ribosomal protein eL39

Chain t2

uL4