HL_6ZVK_054

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUCUCCUC

Length

8 nucleotides

Bulged bases

6ZVK|1|e2|U|1060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_054 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1955

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6ZVK|1|e2|G|1054
6ZVK|1|e2|U|1055
6ZVK|1|e2|C|1056
6ZVK|1|e2|U|1057
6ZVK|1|e2|C|1058
6ZVK|1|e2|C|1059
6ZVK|1|e2|U|1060
6ZVK|1|e2|C|1061

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains