HL_6ZVK_059

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UCGCACGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|U|1364
6ZVK|1|e2|C|1365
6ZVK|1|e2|G|1366
6ZVK|1|e2|C|1367
6ZVK|1|e2|A|1368
6ZVK|1|e2|C|1369
6ZVK|1|e2|G|1370
6ZVK|1|e2|A|1371
6ZVK|1|e2|A|1372
6ZVK|1|e2|A|1373

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 12

Ribosomal protein L15

Chain a7

60S ribosomal protein L13

Chain h2

5.8S ribosomal RNA; 5.8S rRNA

Chain o2

Ribosomal protein L26

Chain t2

uL4