HL_6ZVK_060

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

6ZVK|1|e2|A|1391, 6ZVK|1|e2|A|1392

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_060 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2562

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6ZVK|1|e2|U|1389
6ZVK|1|e2|G|1390
6ZVK|1|e2|A|1391
6ZVK|1|e2|A|1392
6ZVK|1|e2|G|1393
6ZVK|1|e2|G|1394

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain S2

60S RIBOSOMAL PROTEIN EL18

Chain a7

60S ribosomal protein L13

Chain q2

uL15