HL_6ZVK_069

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGCCGAAACGAUC

Length

13 nucleotides

Bulged bases

6ZVK|1|e2|C|1763, 6ZVK|1|e2|G|1764, 6ZVK|1|e2|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_069 not in the Motif Atlas

Geometric match to HL_4O26_001

Geometric discrepancy: 0.3328

The information below is about HL_4O26_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53014.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6ZVK|1|e2|G|1760
6ZVK|1|e2|G|1761
6ZVK|1|e2|C|1762
6ZVK|1|e2|C|1763
6ZVK|1|e2|G|1764
6ZVK|1|e2|A|1765
6ZVK|1|e2|A|1766
6ZVK|1|e2|A|1767
6ZVK|1|e2|C|1768
6ZVK|1|e2|G|1769
6ZVK|1|e2|A|1770
6ZVK|1|e2|U|1771
6ZVK|1|e2|C|1772

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain A3

ribosomal protein uS19

Chain G5

ribosomal protein uS13