HL_6ZVK_071

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

6ZVK|1|e2|G|1868

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_071 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.2194

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZVK|1|e2|G|1863
6ZVK|1|e2|G|1864
6ZVK|1|e2|U|1865
6ZVK|1|e2|A|1866
6ZVK|1|e2|A|1867
6ZVK|1|e2|G|1868
6ZVK|1|e2|C|1869

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain L2

Ribosomal protein L10 (Predicted)

Chain X2

Ribosomal protein L10 (Predicted)

Chain r2

60S ribosomal protein L29