HL_6ZVK_073

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCAUGGAAGUCGG

Length

13 nucleotides

Bulged bases

6ZVK|1|e2|G|1981, 6ZVK|1|e2|A|1983

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|C|1976
6ZVK|1|e2|C|1977
6ZVK|1|e2|A|1978
6ZVK|1|e2|U|1979
6ZVK|1|e2|G|1980
6ZVK|1|e2|G|1981
6ZVK|1|e2|A|1982
6ZVK|1|e2|A|1983
6ZVK|1|e2|G|1984
6ZVK|1|e2|U|1985
6ZVK|1|e2|C|1986
6ZVK|1|e2|G|1987
6ZVK|1|e2|G|1988

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain L2

Ribosomal protein L10 (Predicted)

Chain M2

Uncharacterized protein