HL_6ZVK_074

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_074 not in the Motif Atlas

Geometric match to HL_4PQV_003

Geometric discrepancy: 0.3728

The information below is about HL_4PQV_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97917.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6ZVK|1|e2|U|2005
6ZVK|1|e2|G|2006
6ZVK|1|e2|U|2007
6ZVK|1|e2|A|2008
6ZVK|1|e2|A|2009
6ZVK|1|e2|C|2010
6ZVK|1|e2|A|2011
6ZVK|1|e2|A|2012

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain E2

60S RIBOSOMAL PROTEIN EL40

Chain M2

Uncharacterized protein

Chain W2

60S RIBOSOMAL PROTEIN UL6