HL_6ZVK_075

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GCCCGCC

Length

7 nucleotides

Bulged bases

6ZVK|1|e2|C|2130, 6ZVK|1|e2|C|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|2129
6ZVK|1|e2|C|2130
6ZVK|1|e2|C|2243
6ZVK|1|e2|C|2244
6ZVK|1|e2|G|2245
6ZVK|1|e2|C|2246
6ZVK|1|e2|C|2247

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain U2

uL30