HL_6ZVK_082

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6ZVK|1|e2|U|2530, 6ZVK|1|e2|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_082 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1864

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6ZVK|1|e2|G|2523
6ZVK|1|e2|U|2524
6ZVK|1|e2|U|2525
6ZVK|1|e2|C|2526
6ZVK|1|e2|A|2527
6ZVK|1|e2|G|2528
6ZVK|1|e2|A|2529
6ZVK|1|e2|U|2530
6ZVK|1|e2|C|2531
6ZVK|1|e2|C|2532

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain m2

60S RIBOSOMAL PROTEIN UL23

Chain y2

eL34