HL_6ZVK_083

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_083 not in the Motif Atlas

Geometric match to HL_5F9F_003

Geometric discrepancy: 0.1572

The information below is about HL_5F9F_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6ZVK|1|e2|C|2561
6ZVK|1|e2|G|2562
6ZVK|1|e2|C|2563
6ZVK|1|e2|G|2564
6ZVK|1|e2|A|2565
6ZVK|1|e2|G|2566

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains