HL_6ZVK_103

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6ZVK|1|e2|G|4195, 6ZVK|1|e2|G|4198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|C|4193
6ZVK|1|e2|U|4194
6ZVK|1|e2|G|4195
6ZVK|1|e2|G|4196
6ZVK|1|e2|G|4197
6ZVK|1|e2|G|4198
6ZVK|1|e2|C|4199
6ZVK|1|e2|G|4200
6ZVK|1|e2|G|4201

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain L2

Ribosomal protein L10 (Predicted)

Chain X2

Ribosomal protein L10 (Predicted)

Chain r2

60S ribosomal protein L29