HL_6ZVK_105

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_105 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.3051

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6ZVK|1|e2|G|4250
6ZVK|1|e2|A|4251
6ZVK|1|e2|C|4252
6ZVK|1|e2|A|4253
6ZVK|1|e2|G|4254
6ZVK|1|e2|A|4255
6ZVK|1|e2|A|4256
6ZVK|1|e2|A|4257
6ZVK|1|e2|C|4258

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain Y2

Ribosomal protein L11