HL_6ZVK_109
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UUUGGGUUUUA
- Length
- 11 nucleotides
- Bulged bases
- 6ZVK|1|e2|U|4354
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZVK_109 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.282
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6ZVK|1|e2|U|4352
6ZVK|1|e2|U|4353
6ZVK|1|e2|U|4354
6ZVK|1|e2|G|4355
6ZVK|1|e2|G|4356
6ZVK|1|e2|G|4357
6ZVK|1|e2|U|4358
6ZVK|1|e2|U|4359
6ZVK|1|e2|U|4360
6ZVK|1|e2|U|4361
6ZVK|1|e2|A|4362
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain B2
- 60S ribosomal protein L36
- Chain F2
- eL42
- Chain a7
- 60S ribosomal protein L13
- Chain q2
- uL15
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