HL_6ZVK_112

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_112 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.1604

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6ZVK|1|e2|U|4497
6ZVK|1|e2|U|4498
6ZVK|1|e2|G|4499
6ZVK|1|e2|U|4500
6ZVK|1|e2|U|4501
6ZVK|1|e2|C|4502
6ZVK|1|e2|A|4503

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3