HL_6ZVK_119

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6ZVK|1|e2|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_119 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1963

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6ZVK|1|e2|G|4975
6ZVK|1|e2|U|4976
6ZVK|1|e2|A|4977
6ZVK|1|e2|G|4978
6ZVK|1|e2|A|4979
6ZVK|1|e2|C|4980
6ZVK|1|e2|G|4981
6ZVK|1|e2|A|4982
6ZVK|1|e2|C|4983

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain H2

uL22

Chain u2

eL31