HL_6ZVK_124

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|h2|G|121
6ZVK|1|h2|G|122
6ZVK|1|h2|U|123
6ZVK|1|h2|U|124
6ZVK|1|h2|C|125
6ZVK|1|h2|C|126
6ZVK|1|h2|U|127
6ZVK|1|h2|C|128
6ZVK|1|h2|C|129

Current chains

Chain h2

5.8S RIBOSOMAL RNA

Nearby chains

Chain e2

Large subunit ribosomal RNA; LSU rRNA

Chain m2

60S RIBOSOMAL PROTEIN UL23