HL_6ZVK_128

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GAGCGAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZVK_128 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3215

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6ZVK|1|K3|G|1352
6ZVK|1|K3|A|1353
6ZVK|1|K3|G|1354
6ZVK|1|K3|C|1355
6ZVK|1|K3|G|1356
6ZVK|1|K3|A|1357
6ZVK|1|K3|U|1358
6ZVK|1|K3|U|1359

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain D3

40S RIBOSOMAL PROTEIN ES21

Chain U3

40S_SA_C domain-containing protein

Chain W3

S5 DRBM domain-containing protein