HL_6ZXD_004

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZXD_004 not in the Motif Atlas

Geometric match to HL_1MFQ_002

Geometric discrepancy: 0.1987

The information below is about HL_1MFQ_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6ZXD|1|2|U|197
6ZXD|1|2|U|198
6ZXD|1|2|C|199
6ZXD|1|2|G|200
6ZXD|1|2|C|201
6ZXD|1|2|G|202

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8