HL_6ZXD_017

3D structure

PDB id

6ZXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

6ZXD|1|2|U|889, 6ZXD|1|2|U|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXD|1|2|U|885
6ZXD|1|2|A|886
6ZXD|1|2|U|887
6ZXD|1|2|U|888
6ZXD|1|2|U|889
6ZXD|1|2|U|890
6ZXD|1|2|G|891
6ZXD|1|2|U|892
6ZXD|1|2|U|893
6ZXD|1|2|G|894
6ZXD|1|2|G|895
6ZXD|1|2|U|896
6ZXD|1|2|U|897
6ZXD|1|2|U|898
6ZXD|1|2|U|899
6ZXD|1|2|C|900
6ZXD|1|2|G|901

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain L

40S ribosomal protein S11