HL_6ZXF_002

3D structure

PDB id

6ZXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGCUACAG

Length

9 nucleotides

Bulged bases

6ZXF|1|2|U|76

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZXF_002 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3308

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6ZXF|1|2|C|69
6ZXF|1|2|G|70
6ZXF|1|2|G|71
6ZXF|1|2|C|72
6ZXF|1|2|U|76
6ZXF|1|2|A|77
6ZXF|1|2|C|78
6ZXF|1|2|A|79
6ZXF|1|2|G|80

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6