HL_6ZXF_012

3D structure

PDB id

6ZXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZXF_012 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.2289

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZXF|1|2|A|569
6ZXF|1|2|C|570
6ZXF|1|2|U|571
6ZXF|1|2|U|572
6ZXF|1|2|U|573
6ZXF|1|2|A|574
6ZXF|1|2|A|575
6ZXF|1|2|A|576
6ZXF|1|2|U|577
6ZXF|1|2|C|578
6ZXF|1|2|C|579
6ZXF|1|2|U|580
6ZXF|1|2|U|581

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24