HL_6ZXG_012

3D structure

PDB id

6ZXG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACU(PSU)UAA(A2M)UCCUU

Length

13 nucleotides

Bulged bases

6ZXG|1|2|U|573

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZXG_012 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2554

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZXG|1|2|A|569
6ZXG|1|2|C|570
6ZXG|1|2|U|571
6ZXG|1|2|PSU|572
6ZXG|1|2|U|573
6ZXG|1|2|A|574
6ZXG|1|2|A|575
6ZXG|1|2|A2M|576
6ZXG|1|2|U|577
6ZXG|1|2|C|578
6ZXG|1|2|C|579
6ZXG|1|2|U|580
6ZXG|1|2|U|581

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24