HL_6ZXG_022

3D structure

PDB id

6ZXG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZXG_022 not in the Motif Atlas

Geometric match to HL_4V88_211

Geometric discrepancy: 0.0748

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6ZXG|1|2|U|1178
6ZXG|1|2|G|1179
6ZXG|1|2|C|1180
6ZXG|1|2|A|1181
6ZXG|1|2|A|1182
6ZXG|1|2|A|1183

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain k

Leucine-rich repeat-containing protein 47

Chain z

Serine/threonine-protein kinase RIO1