HL_6ZXG_033

3D structure

PDB id

6ZXG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUA(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

6ZXG|1|2|A|1849

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZXG_033 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2102

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6ZXG|1|2|G|1847
6ZXG|1|2|U|1848
6ZXG|1|2|A|1849
6ZXG|1|2|MA6|1850
6ZXG|1|2|MA6|1851
6ZXG|1|2|C|1852

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain z

Serine/threonine-protein kinase RIO1