HL_6ZXH_012

3D structure

PDB id

6ZXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACU(PSU)UAA(A2M)UCCUU

Length

13 nucleotides

Bulged bases

6ZXH|1|2|U|573

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZXH_012 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.2599

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZXH|1|2|A|569
6ZXH|1|2|C|570
6ZXH|1|2|U|571
6ZXH|1|2|PSU|572
6ZXH|1|2|U|573
6ZXH|1|2|A|574
6ZXH|1|2|A|575
6ZXH|1|2|A2M|576
6ZXH|1|2|U|577
6ZXH|1|2|C|578
6ZXH|1|2|C|579
6ZXH|1|2|U|580
6ZXH|1|2|U|581

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24