HL_6ZXH_027

3D structure

PDB id

6ZXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCCCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZXH_027 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.423

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6ZXH|1|2|C|1416
6ZXH|1|2|C|1417
6ZXH|1|2|C|1418
6ZXH|1|2|C|1423
6ZXH|1|2|G|1424

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain T

40S ribosomal protein S19