HL_7A01_001

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACUUUUAUAGUUUAUGAAAUCUUUAUUAUU

Length

30 nucleotides

Bulged bases

7A01|1|E1|C|6296, 7A01|1|E1|U|6298, 7A01|1|E1|U|6306, 7A01|1|E1|A|6308, 7A01|1|E1|U|6309, 7A01|1|E1|C|6315, 7A01|1|E1|U|6316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|E1|A|6295
7A01|1|E1|C|6296
7A01|1|E1|U|6297
7A01|1|E1|U|6298
7A01|1|E1|U|6299
7A01|1|E1|U|6300
7A01|1|E1|A|6301
7A01|1|E1|U|6302
7A01|1|E1|A|6303
7A01|1|E1|G|6304
7A01|1|E1|U|6305
7A01|1|E1|U|6306
7A01|1|E1|U|6307
7A01|1|E1|A|6308
7A01|1|E1|U|6309
7A01|1|E1|G|6310
7A01|1|E1|A|6311
7A01|1|E1|A|6312
7A01|1|E1|A|6313
7A01|1|E1|U|6314
7A01|1|E1|C|6315
7A01|1|E1|U|6316
7A01|1|E1|U|6317
7A01|1|E1|U|6318
7A01|1|E1|A|6319
7A01|1|E1|U|6320
7A01|1|E1|U|6321
7A01|1|E1|A|6322
7A01|1|E1|U|6323
7A01|1|E1|U|6324

Current chains

Chain E1

INTERNAL RIBOSOME ENTRY SITE

Nearby chains

Chain 42

Ribosomal protein