HL_7A01_002

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAGCAAUGGUUUUAAAGG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|E1|C|6369
7A01|1|E1|C|6370
7A01|1|E1|A|6371
7A01|1|E1|G|6372
7A01|1|E1|C|6373
7A01|1|E1|A|6374
7A01|1|E1|A|6375
7A01|1|E1|U|6376
7A01|1|E1|G|6377
7A01|1|E1|G|6378
7A01|1|E1|U|6379
7A01|1|E1|U|6380
7A01|1|E1|U|6381
7A01|1|E1|U|6382
7A01|1|E1|A|6383
7A01|1|E1|A|6384
7A01|1|E1|A|6385
7A01|1|E1|G|6386
7A01|1|E1|G|6387

Current chains

Chain E1

INTERNAL RIBOSOME ENTRY SITE

Nearby chains

Chain A3

ribosomal protein uS19

Chain B3

Uncharacterized protein

Chain K3

Small subunit ribosomal RNA; SSU rRNA