HL_7A01_005

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUGGUAAUUCUAGA

Length

15 nucleotides

Bulged bases

7A01|1|K3|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|K3|U|152
7A01|1|K3|G|153
7A01|1|K3|U|154
7A01|1|K3|G|155
7A01|1|K3|G|156
7A01|1|K3|U|157
7A01|1|K3|A|158
7A01|1|K3|A|159
7A01|1|K3|U|160
7A01|1|K3|U|161
7A01|1|K3|C|162
7A01|1|K3|U|163
7A01|1|K3|A|164
7A01|1|K3|G|165
7A01|1|K3|A|166

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain I5

40S ribosomal protein S24

Chain b3

40S ribosomal protein S6