HL_7A01_007

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

7A01|1|K3|A|292, 7A01|1|K3|C|293, 7A01|1|K3|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_007 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2257

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7A01|1|K3|G|288
7A01|1|K3|G|289
7A01|1|K3|U|290
7A01|1|K3|G|291
7A01|1|K3|A|292
7A01|1|K3|C|293
7A01|1|K3|U|294
7A01|1|K3|C|295

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain G3

Ribosomal protein S11

Chain b3

40S ribosomal protein S6

Chain j3

40S ribosomal protein S4,40S ribosomal protein S4