HL_7A01_015

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_015 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.3851

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7A01|1|K3|A|569
7A01|1|K3|C|570
7A01|1|K3|U|571
7A01|1|K3|U|572
7A01|1|K3|U|573
7A01|1|K3|A|574
7A01|1|K3|A|575
7A01|1|K3|A|576
7A01|1|K3|U|577
7A01|1|K3|C|578
7A01|1|K3|C|579
7A01|1|K3|U|580
7A01|1|K3|U|581

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain I5

40S ribosomal protein S24

Chain d3

Ribosomal protein S9 (Predicted)

Chain j3

40S ribosomal protein S4,40S ribosomal protein S4