HL_7A01_019

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCUAUUUUGUUGGUUUUCGGA

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|K3|U|883
7A01|1|K3|C|884
7A01|1|K3|U|885
7A01|1|K3|A|886
7A01|1|K3|U|887
7A01|1|K3|U|888
7A01|1|K3|U|889
7A01|1|K3|U|890
7A01|1|K3|G|891
7A01|1|K3|U|892
7A01|1|K3|U|893
7A01|1|K3|G|894
7A01|1|K3|G|895
7A01|1|K3|U|896
7A01|1|K3|U|897
7A01|1|K3|U|898
7A01|1|K3|U|899
7A01|1|K3|C|900
7A01|1|K3|G|901
7A01|1|K3|G|902
7A01|1|K3|A|903

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain G3

Ribosomal protein S11

Chain b3

40S ribosomal protein S6