HL_7A01_025

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_025 not in the Motif Atlas

Homologous match to HL_4V88_211

Geometric discrepancy: 0.3798

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7A01|1|K3|U|1178
7A01|1|K3|G|1179
7A01|1|K3|C|1180
7A01|1|K3|A|1181
7A01|1|K3|A|1182
7A01|1|K3|A|1183

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain I2

ribosomal protein eL43

Chain X3

60s ribosomal protein l41

Chain e2

Large subunit ribosomal RNA; LSU rRNA