HL_7A01_031

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_031 not in the Motif Atlas

Geometric match to HL_7A0S_031

Geometric discrepancy: 0.3734

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7A01|1|K3|C|1460
7A01|1|K3|G|1461
7A01|1|K3|U|1462
7A01|1|K3|U|1463
7A01|1|K3|C|1464
7A01|1|K3|A|1465
7A01|1|K3|G|1466

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain C3

Uncharacterized protein

Chain a3

ribosomal protein RACK1