HL_7A01_033

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUUGCAAUUAUUC

Length

14 nucleotides

Bulged bases

7A01|1|K3|C|1618, 7A01|1|K3|U|1621, 7A01|1|K3|U|1622, 7A01|1|K3|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|K3|G|1613
7A01|1|K3|A|1614
7A01|1|K3|U|1615
7A01|1|K3|U|1616
7A01|1|K3|G|1617
7A01|1|K3|C|1618
7A01|1|K3|A|1619
7A01|1|K3|A|1620
7A01|1|K3|U|1621
7A01|1|K3|U|1622
7A01|1|K3|A|1623
7A01|1|K3|U|1624
7A01|1|K3|U|1625
7A01|1|K3|C|1626

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain A3

ribosomal protein uS19

Chain G5

ribosomal protein uS13

Chain H3

ribosomal protein uS14

Chain H5

Uncharacterized protein