HL_7A01_034
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 7A01|1|K3|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7A01_034 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.4427
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7A01|1|K3|G|1658
7A01|1|K3|U|1659
7A01|1|K3|C|1660
7A01|1|K3|A|1661
7A01|1|K3|U|1662
7A01|1|K3|A|1663
7A01|1|K3|A|1664
7A01|1|K3|G|1665
7A01|1|K3|C|1666
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain B3
- Uncharacterized protein
- Chain H3
- ribosomal protein uS14
- Chain H5
- Uncharacterized protein
- Chain I3
- Ribosomal_S10 domain-containing protein
Coloring options: