HL_7A01_035

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGUCGGCCCACGGCCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|K3|G|1758
7A01|1|K3|G|1759
7A01|1|K3|G|1760
7A01|1|K3|U|1761
7A01|1|K3|C|1762
7A01|1|K3|G|1763
7A01|1|K3|G|1764
7A01|1|K3|C|1765
7A01|1|K3|C|1766
7A01|1|K3|C|1767
7A01|1|K3|A|1768
7A01|1|K3|C|1769
7A01|1|K3|G|1770
7A01|1|K3|G|1771
7A01|1|K3|C|1772
7A01|1|K3|C|1773
7A01|1|K3|C|1774

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain b3

40S ribosomal protein S6