HL_7A01_047

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

7A01|1|e2|G|315, 7A01|1|e2|U|316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_047 not in the Motif Atlas

Homologous match to HL_8C3A_009

Geometric discrepancy: 0.1486

The information below is about HL_8C3A_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_15076.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7A01|1|e2|G|314
7A01|1|e2|G|315
7A01|1|e2|U|316
7A01|1|e2|A|317
7A01|1|e2|A|318
7A01|1|e2|A|319
7A01|1|e2|C|320
7A01|1|e2|U|321
7A01|1|e2|C|322
7A01|1|e2|C|323

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 12

Ribosomal protein L15

Chain B2

60S ribosomal protein L36

Chain F2

eL42

Chain q2

uL15