HL_7A01_051

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCCC

Length

5 nucleotides

Bulged bases

7A01|1|e2|C|905

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_051 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3474

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7A01|1|e2|G|756
7A01|1|e2|G|757
7A01|1|e2|C|905
7A01|1|e2|C|906
7A01|1|e2|C|907

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain W2

Uncharacterized protein