HL_7A01_052

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUCGGCGUCUCCUCGUGG

Length

18 nucleotides

Bulged bases

7A01|1|e2|C|1050, 7A01|1|e2|G|1052, 7A01|1|e2|C|1053

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|C|988
7A01|1|e2|U|989
7A01|1|e2|C|1050
7A01|1|e2|G|1051
7A01|1|e2|G|1052
7A01|1|e2|C|1053
7A01|1|e2|G|1054
7A01|1|e2|U|1055
7A01|1|e2|C|1056
7A01|1|e2|U|1057
7A01|1|e2|C|1058
7A01|1|e2|C|1059
7A01|1|e2|U|1060
7A01|1|e2|C|1061
7A01|1|e2|G|1062
7A01|1|e2|U|1063
7A01|1|e2|G|1064
7A01|1|e2|G|1065

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain R2

Ribosomal_L6e_N domain-containing protein