HL_7A01_059

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

7A01|1|e2|C|1437, 7A01|1|e2|U|1438, 7A01|1|e2|C|1439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|C|1436
7A01|1|e2|C|1437
7A01|1|e2|U|1438
7A01|1|e2|C|1439
7A01|1|e2|U|1440
7A01|1|e2|C|1441
7A01|1|e2|C|1442
7A01|1|e2|A|1443
7A01|1|e2|G|1444
7A01|1|e2|U|1445
7A01|1|e2|C|1446
7A01|1|e2|C|1447
7A01|1|e2|G|1448

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain S2

60S RIBOSOMAL PROTEIN EL18

Chain U2

uL30

Chain t2

uL4