HL_7A01_060

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_060 not in the Motif Atlas

Geometric match to HL_4V9F_041

Geometric discrepancy: 0.0917

The information below is about HL_4V9F_041

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

7A01|1|e2|C|1480
7A01|1|e2|C|1481
7A01|1|e2|G|1482
7A01|1|e2|C|1483
7A01|1|e2|G|1484

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain B2

60S ribosomal protein L36

Chain a7

60S ribosomal protein L13