HL_7A01_065

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCACCCCCGC

Length

10 nucleotides

Bulged bases

7A01|1|e2|C|1715, 7A01|1|e2|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7A01_065 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2582

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7A01|1|e2|G|1708
7A01|1|e2|C|1709
7A01|1|e2|A|1710
7A01|1|e2|C|1711
7A01|1|e2|C|1712
7A01|1|e2|C|1713
7A01|1|e2|C|1714
7A01|1|e2|C|1715
7A01|1|e2|G|1716
7A01|1|e2|C|1717

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain S2

60S RIBOSOMAL PROTEIN EL18

Chain U2

uL30

Chain t2

uL4